Welcome to EnigmaVis. EnigmaVis is a tool for generating interactive plots that you can use to visualize and navigate datasets from ENIGMA. To get begin, make a query using the fields below. Hit “submit” to generate your plot. Additional documentation of features will be displayed below the plot, after it is generated.
EnigmaVis is free to use. If you use the tool, please cite the EnigmaVis paper:
Novak, N. et al., EnigmaVis: Online Interactive Visualization of Genome-Wide Association Studies of the Enhancing NeuroImaging Genetics through Meta-Analysis (ENIGMA) Consortium. Twin Res Hum Genet. 2012 Jun;15(3):414-8.
Search by SNP, Position or Gene:
Step 1) Select phenotypes to plot. Select up to three phenotpes from the tree below.
You may add up to 3 phenotypes by clicking the checkboxes.
Optional: You can use EnigmaVis to plot your own data alongside the results from the ENIGMA consortium. To do this, upload a comma-delimited CSV file containing the data you would like to plot. An example file demonstrating the correct format is provided here. You can upload files up to 2Mb in size. After you choose your file, press “Upload selected file,” and your data will be uploaded and then appear in the phenotype selection dropdown, above. If your data does not appear immediately, please refresh the page.
Step 2) Enter your query in the box below. EnigmaVis will interpret what you want to plot. Example queries are provided in blue below to help get you started. You can search by SNP, position, or gene.
You can use the button below to generate a wide (Manhattan) plot. Currently, Manhattan plots cannot be generated for multiple phenotypes. The Manhattan plot is generated from the phenotype chosen in the phenotype selection dropdown box, above.
Search by gene (queries by example):